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CABRI Guidelines for Catalogue Production

Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC


Data input & authentication Flat file preparation Flat file submission


Plasmids format and reference list: Agreed list for Host for distribution for plasmids

This field should contain the complete input value, consisting of three parts:

  • taxonomic designation
  • group (when applicable)
  • strain designation, which should be entered as one single word, including, in the following order:
    • chromosomal information
    • episomal information
    • lambda information

Additional information (e.g. genetic description of the strain) should be entered behind the strain designation, separated by a space and placed between brackets.

To be indexed by CABRI, and as such searchable:

  • the complete input value as a group of words (excl. additional information)
  • the taxonomic designation as single terms

The thesaurus file containing the thesaurus values must be implemented in the same way as the synonym file for the "Name" field in e.g. the bacteria catalogues.

Input value Thesaurus value
Agrobacterium tumefaciens C58 C58
Agrobacterium tumefaciens LBA4404 GV3101 LBA4404
GV3101
Alcaligenes denitrificans AH AH
Alcaligenes sp. Cur30 Cur30
Alcaligenes sp. O-1 O-1
Alcaligenes sp. PW PW
Bacillus subtilis 1012 1012
Bacillus subtilis 168 168
Bacillus subtilis 1E18 1E18
Bacillus subtilis 1E31 1E31
Bacillus subtilis 1E32 1E32
Bacillus subtilis 1E34 1E34
Bacillus subtilis 1E7 1E7
Bacillus subtilis 1G-34 1G-34
Bacillus subtilis 2G-20 2G-20
Bacillus subtilis 3335 UM4 UM4
Bacillus subtilis 3335 UM8 UM8
Bacillus subtilis BD170 BD170
Bacillus subtilis BD403 BD403
Bacillus subtilis BD426 BD426
Bacillus subtilis BD466 BD466
Bacillus subtilis BD490 BD490
Bacillus subtilis BR151 BR151
Bacillus subtilis BR157 BR157
Bacillus subtilis DB163 DB163
Bacillus subtilis KBS1 KBS1
Bacillus subtilis KBS2 KBS2
Bacillus subtilis KBS3 KBS3
Bacillus subtilis SB202 SB202
Bacillus subtilis YB886 YB886
Corynebacterium glutamicum LA201 LA201
Enterococcus faecalis V347 V347
Escherichia coli  
Escherichia coli B BL21(DE3) BL21(DE3)
Escherichia coli B WP2 WP2
Escherichia coli B WP2uvrA WP2
Escherichia coli BNN45 BNN45
Escherichia coli CMK603 CMK603
Escherichia coli K12 K12
Escherichia coli K12 1046 1046
Escherichia coli K12 294 294
Escherichia coli K12 5K 5K
Escherichia coli K12 803 803
Escherichia coli K12 AB1157 AB1157
Escherichia coli K12 AB1157umuC36 AB1157
Escherichia coli K12 AB2463 AB2463
Escherichia coli K12 AG1688 AG1688
Escherichia coli K12 AM1062 AM1062
Escherichia coli K12 AN1459 AN1459
Escherichia coli K12 AW1061 AW1061
Escherichia coli K12 BHB2600 BHB2600
Escherichia coli K12 BMH71-18 BMH71-18
Escherichia coli K12 C600 C600
Escherichia coli K12 C600 SF8 C600
SF8
Escherichia coli K12 CB450 CB450
Escherichia coli K12 CC118(lambdapir) CC118
Escherichia coli K12 CJ236 CJ236
Escherichia coli K12 CL83 CL83
Escherichia coli K12 CR34 CR34
Escherichia coli K12 CSH26 CSH26
Escherichia coli K12 CSH52 CSH52
Escherichia coli K12 DB1443 DB1443
Escherichia coli K12 DH1 DH1
Escherichia coli K12 DH1 RU2945 DH1
RU2945
Escherichia coli K12 DH1(lambda) DH1
Escherichia coli K12 DH5 DH5
Escherichia coli K12 DH5alpha DH5
Escherichia coli K12 DH5alphaF’ DH5
Escherichia coli K12 DS410(lambdacIts) DS410
Escherichia coli K12 EC294 EC294
Escherichia coli K12 ED8654 ED8654
Escherichia coli K12 F165 F165
Escherichia coli K12 GEc137 Gec137
Escherichia coli K12 GM119 GM119
Escherichia coli K12 GM31 GM31
Escherichia coli K12 H12R8a H12R8a
Escherichia coli K12 HB101 HB101
Escherichia coli K12 HB101 B1046 HB101
B1046
Escherichia coli K12 HMS174 HMS174
Escherichia coli K12 J53 J53
Escherichia coli K12 J53-2 J53
Escherichia coli K12 J62 J62
Escherichia coli K12 JA221 JA221
Escherichia coli K12 JA228 JA228
Escherichia coli K12 JC411 JC411
Escherichia coli K12 JH372 JH372
Escherichia coli K12 JM101 JM101
Escherichia coli K12 JM101hsdR JM101
Escherichia coli K12 JM101hsdSrecA JM101
Escherichia coli K12 JM103 JM103
Escherichia coli K12 JM108 JM108
Escherichia coli K12 JM109 JM109
Escherichia coli K12 JM83 JM83
Escherichia coli K12 JMB9 JMB9
Escherichia coli K12 JMP396RifrNalr JMP396
Escherichia coli K12 JMP397RifrNalr JMP397
Escherichia coli K12 JMP398RifrNalr JMP398
Escherichia coli K12 JMP399RifrNalr JMP399
Escherichia coli K12 JS218 JS218
Escherichia coli K12 JS219 JS219
Escherichia coli K12 K12deltaH1 K12
Escherichia coli K12 K12deltaH1deltatrp K12
NF1
Escherichia coli K12 K12deltaH1deltatrpF'Lac K12
Escherichia coli K12 K12r-m+(lambda) K12
Escherichia coli K12 K38 K38
Escherichia coli K12 K514(lambda) K514
Escherichia coli K12 K803 K803
Escherichia coli K12 KMBL1164 KMBL1164
Escherichia coli K12 LG75 LG75
Escherichia coli K12 LK111 LK111
Escherichia coli K12 M182 M182
Escherichia coli K12 M5219 M5219
Escherichia coli K12 MA8 MA8
Escherichia coli K12 MC1000 MC1000
Escherichia coli K12 MC1009 MC1009
Escherichia coli K12 MC1022 MC1022
Escherichia coli K12 MC1060 MC1060
Escherichia coli K12 MC1061 MC1061
Escherichia coli K12 MC1061(lambda) MC1061
Escherichia coli K12 MC1061F' MC1061
Escherichia coli K12 MC1065 MC1065
Escherichia coli K12 MC1066 MC1066
Escherichia coli K12 MH1 MH1
Escherichia coli K12 MM294 MM294
Escherichia coli K12 NM522 NM522
Escherichia coli K12 PC2166 PC2166
Escherichia coli K12 PM191 PM191
Escherichia coli K12 pop2136 pop2136
Escherichia coli K12 QD5003 QD5003
Escherichia coli K12 RR1 RR1
Escherichia coli K12 RR1(lambdacI857) RR1
Escherichia coli K12 RR1ZdeltaM15 RR1
Escherichia coli K12 RR28 RR28
Escherichia coli K12 S17-1 S17-1
Escherichia coli K12 S17-1(lambdapir) S17-1
Escherichia coli K12 S17-1chi6149 S17-1
Escherichia coli K12 SC109 SC109
Escherichia coli K12 SE6004 SE6004
Escherichia coli K12 SK1592 SK1592
Escherichia coli K12 SK2284 SK2284
Escherichia coli K12 SL2036 SL2036
Escherichia coli K12 SURE SURE
Escherichia coli K12 TB1 TB1
Escherichia coli K12 UT4400 UT4400
Escherichia coli K12 W3110 mutant W3110
Escherichia coli K12 W3110thy- W3110
Escherichia coli K12 WA803 WA803
Escherichia coli K12 WN837 WN837
Escherichia coli K12 XL1 Blue XL1
Escherichia coli K12 Y1088 Y1088
Escherichia coli K12 Y1089 Y1089
Escherichia coli K12 Y1090 Y1090
Escherichia coli MC101 MC101
Escherichia coli N100 N100
Escherichia coli N99cI+ N99
Escherichia coli V517 V517
Escherichia coli V854 V854
Escherichia coli W6(lambdarex) W6
Escherichia coli YMC9 YMC9
Gordona rubropertinctus
Lactobacillus paracasei subsp. paracasei YIT9032 YIT9032
Lactobacillus reuteri LINCO LINCO
Lactobacillus reuteri SH23 SH23
Lactobacillus reuteri STOCK STOCK
Lactococcus lactis subsp. cremoris AC1 AC1
Lactococcus lactis subsp. cremoris MF3 MF3
Lactococcus lactis subsp. cremoris Wg2 Wg2
Lactococcus lactis subsp. lactis 3078 3078
Lactococcus lactis subsp. lactis F7/2 F7/2
Lactococcus lactis subsp. lactis FA318 FA318
Lactococcus lactis subsp. lactis LMO230 LMO230
Lactococcus lactis subsp. lactis W53 W53
Lactococcus lactis subsp. lactis W932 W932
Pseudomonas aeruginosa PAO11Trp-Nal- PAO11
Pseudomonas aeruginosa PAO8 PAO8
Pseudomonas aeruginosa PU21 PU21
Pseudomonas fluorescens 5RL 5RL
Pseudomonas fluorescens HK44 HK44
Pseudomonas putida KF439 KF439
Pseudomonas putida MT15 MT15
Pseudomonas putida mt-2 PaW1 mt-2
PaW1
Pseudomonas putida MT20 MT20
Pseudomonas putida MT53 MT53
Pseudomonas putida PaW611 PaW611
Pseudomonas putida PaW701 PaW701
Pseudomonas putida PaW736 PaW736
Pseudomonas putida PpG1 PpG1
Pseudomonas putida PpG2100 PpG2100
Pseudomonas putida PpG25 PpG25
Pseudomonas putida PpG7 PpG7
Pseudomonas putida RB1351 RB1351
Pseudomonas sp. MT14 MT14
Pseudomonas sp. MT14-100 MT14-100
Pseudomonas sp. MT14-101 MT14-101
Pseudomonas sp. MT14-26 MT14-26
Ralstonia eutropha H16 H16
Ralstonia eutropha JMP134 JMP134
Ralstonia eutropha JMP363 JMP363
Ralstonia eutropha JMP364 JMP364
Ralstonia eutropha JMP365 JMP365
Ralstonia eutropha JMP366 JMP366
Rhizobium trifolii ANU618 ANU618
Rhizobium trifolii LPR5035 LPR5035
Salmonella choleraesuis subsp. choleraesuis TA1535 TA1535
Sinorhizobium meliloti 41AK631 41AK631
Sinorhizobium meliloti MVII/1 MVII/1
Staphylococcus aureus subsp. aureus SA1494 SA1494
Staphylococcus aureus subsp. aureus SA2044 SA2044
Staphylococcus aureus subsp. aureus SK982 SK982
Staphylococcus carnosus TM300 TM300
Streptococcus thermophilus St St
Streptomyces ambofaciens B2 B2
Streptomyces ambofaciens B3 B3
Streptomyces sp. TK23 TK23
Variovorax paradoxus JMP116 JMP116
Zymomonas mobilis subsp. mobilis  
 
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